Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB70253.1Fic family protein; KEGG: yey:Y11_23931 0.0048 type I restriction-modification system,specificity subunit S; Psort location: Cytoplasmic, score: 8.96. (111 aa)    
Predicted Functional Partners:
KXB70252.1
Hypothetical protein; KEGG: coc:Coch_1238 0.0082 adenylosuccinate lyase; K01756 adenylosuccinate lyase.
     0.989
KXB70251.1
Glycosyltransferase, group 2 family protein; KEGG: zga:zobellia_1750 5.0e-56 glycosyltransferase; Psort location: CytoplasmicMembrane, score: 7.88.
       0.519
KXB69451.1
Fic family protein; Psort location: Cytoplasmic, score: 8.96.
 
    0.472
KXB70250.1
KEGG: sgg:SGGBAA2069_c10590 8.0e-104 mviM; oxidoreductase domain-containing protein.
       0.471
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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