Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB70288.1RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.96. (167 aa)    
Predicted Functional Partners:
KXB70284.1
VRR-NUC domain protein; Psort location: Cytoplasmic, score: 8.96.
       0.669
KXB70285.1
Protein, SNF2 family; KEGG: bao:BAMF_3093 2.7e-135 SWI/SNF chromatin-remodeling complex subunit snf22; Psort location: Cytoplasmic, score: 8.96.
       0.664
KXB70286.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.664
KXB70287.1
Hypothetical protein.
       0.664
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.623
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.620
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.564
KXB70289.1
Terminase small subunit.
  
    0.464
KXB70290.1
Phage uncharacterized protein; Psort location: Cytoplasmic, score: 8.96.
       0.435
KXB70291.1
KEGG: edi:EDI_341030 5.4e-07 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
       0.422
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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