Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB70296.1Phage regulatory protein, Rha family; KEGG: edi:EDI_048590 0.0054 kinetochore protein NDC80; Psort location: Cytoplasmic, score: 8.96. (278 aa)    
Predicted Functional Partners:
KXB70297.1
Hypothetical protein; KEGG: edi:EDI_048910 0.00010 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
       0.651
KXB70298.1
Hypothetical protein.
       0.651
KXB70302.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.630
KXB70303.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.613
KXB70299.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.607
KXB70300.1
Hypothetical protein.
       0.583
KXB70301.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.568
KXB70295.1
Hypothetical protein.
       0.511
KXB67991.1
Putative phage head-tail adaptor; Psort location: Cytoplasmic, score: 8.96.
 
     0.498
KXB70304.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.496
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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