Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB70216.1KEGG: gya:GYMC52_3613 1.3e-117 DNA-cytosine methyltransferase K00558; Psort location: Cytoplasmic, score: 8.96. (387 aa)    
Predicted Functional Partners:
KXB70214.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.773
KXB70215.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.773
Vsr
DNA mismatch endonuclease Vsr; KEGG: pmc:P9515_04381 7.5e-37 hypothetical protein; K07458 DNA mismatch endonuclease, patch repair protein; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.772
KXB70213.1
Hypothetical protein; KEGG: lan:Lacal_0723 0.0029 2-oxoglutarate dehydrogenase, E1 subunit K00164; Psort location: Cytoplasmic, score: 8.96.
       0.768
KXB69113.1
HaeIII restriction endonuclease; KEGG: bsa:Bacsa_1533 3.3e-91 type II site-specific deoxyribonuclease; Psort location: Cytoplasmic, score: 8.96.
 
     0.689
KXB70211.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.647
KXB70212.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.647
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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