KXB70089.1 protein (Leptotrichia wadei) - STRING interaction network

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KXB70089.1

Hypothetical protein; KEGG: cbi:CLJ_B2861 0.0061 putative V-type ATPase subunit G; K02121 V-type H+-transporting ATPase subunit E; Psort location: Cytoplasmic, score: 8.96. (116 aa)

Predicted Functional Partners:

KXB70090.1

0.458

rnr

0.421

smpB

0.409

Your Current Organism:

Leptotrichia wadei

NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXB70089.1	KXB70090.1	HMPREF3180_00126	HMPREF3180_00127	Hypothetical protein; KEGG: cbi:CLJ_B2861 0.0061 putative V-type ATPase subunit G; K02121 V-type H+-transporting ATPase subunit E; Psort location: Cytoplasmic, score: 8.96.	Hydrolase, HD family; KEGG: sgg:SGGBAA2069_c18170 2.2e-21 HD domain-containing protein; Psort location: Cytoplasmic, score: 8.96.	0.458
KXB70089.1	rnr	HMPREF3180_00126	HMPREF3180_00128	Hypothetical protein; KEGG: cbi:CLJ_B2861 0.0061 putative V-type ATPase subunit G; K02121 V-type H+-transporting ATPase subunit E; Psort location: Cytoplasmic, score: 8.96.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.421
KXB70089.1	smpB	HMPREF3180_00126	HMPREF3180_00129	Hypothetical protein; KEGG: cbi:CLJ_B2861 0.0061 putative V-type ATPase subunit G; K02121 V-type H+-transporting ATPase subunit E; Psort location: Cytoplasmic, score: 8.96.	SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]	0.409
KXB70090.1	KXB70089.1	HMPREF3180_00127	HMPREF3180_00126	Hydrolase, HD family; KEGG: sgg:SGGBAA2069_c18170 2.2e-21 HD domain-containing protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; KEGG: cbi:CLJ_B2861 0.0061 putative V-type ATPase subunit G; K02121 V-type H+-transporting ATPase subunit E; Psort location: Cytoplasmic, score: 8.96.	0.458
KXB70090.1	rnr	HMPREF3180_00127	HMPREF3180_00128	Hydrolase, HD family; KEGG: sgg:SGGBAA2069_c18170 2.2e-21 HD domain-containing protein; Psort location: Cytoplasmic, score: 8.96.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.811
KXB70090.1	smpB	HMPREF3180_00127	HMPREF3180_00129	Hydrolase, HD family; KEGG: sgg:SGGBAA2069_c18170 2.2e-21 HD domain-containing protein; Psort location: Cytoplasmic, score: 8.96.	SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]	0.724
rnr	KXB70089.1	HMPREF3180_00128	HMPREF3180_00126	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	Hypothetical protein; KEGG: cbi:CLJ_B2861 0.0061 putative V-type ATPase subunit G; K02121 V-type H+-transporting ATPase subunit E; Psort location: Cytoplasmic, score: 8.96.	0.421
rnr	KXB70090.1	HMPREF3180_00128	HMPREF3180_00127	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	Hydrolase, HD family; KEGG: sgg:SGGBAA2069_c18170 2.2e-21 HD domain-containing protein; Psort location: Cytoplasmic, score: 8.96.	0.811
rnr	smpB	HMPREF3180_00128	HMPREF3180_00129	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]	0.834
smpB	KXB70089.1	HMPREF3180_00129	HMPREF3180_00126	SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]	Hypothetical protein; KEGG: cbi:CLJ_B2861 0.0061 putative V-type ATPase subunit G; K02121 V-type H+-transporting ATPase subunit E; Psort location: Cytoplasmic, score: 8.96.	0.409
smpB	KXB70090.1	HMPREF3180_00129	HMPREF3180_00127	SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]	Hydrolase, HD family; KEGG: sgg:SGGBAA2069_c18170 2.2e-21 HD domain-containing protein; Psort location: Cytoplasmic, score: 8.96.	0.724
smpB	rnr	HMPREF3180_00129	HMPREF3180_00128	SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.834

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