Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB69838.17TM receptor with intracellular HD hydrolase; KEGG: bmq:BMQ_4552 6.0e-83 metal-dependent phosphohydrolase K07037; Psort location: CytoplasmicMembrane, score: 9.16. (685 aa)    
Predicted Functional Partners:
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.727
KXB69837.1
DnaQ family exonuclease/DinG family helicase; KEGG: lba:Lebu_1866 0. helicase c2; K03722 ATP-dependent DNA helicase DinG; Psort location: Cytoplasmic, score: 9.97.
 
     0.649
KXB69840.1
PAP2 family protein; KEGG: lba:Lebu_1863 1.3e-117 diacylglycerol kinase; K00901 diacylglycerol kinase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.596
KXB69257.1
OstA-like protein; KEGG: pfa:PF14_0392 0.00013 serine/threonine protein kinase, putative; K08282 non-specific serine/threonine protein kinase; Psort location: OuterMembrane, score: 9.49.
 
     0.465
KXB69836.1
Hypothetical protein.
       0.461
RsmD
RNA methyltransferase, RsmD family; KEGG: fnu:FN1329 2.8e-53 methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96.
  
     0.433
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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