Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB69247.1Hypothetical protein; KEGG: pfo:Pfl01_2683 1.2e-08 outer membrane autotransporter barrel protein; K12685 subtilase-type serine protease. (633 aa)    
Predicted Functional Partners:
KXB69248.1
KEGG: lba:Lebu_1766 1.6e-114 TatD family hydrolase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97.
  
    0.765
KXB64645.1
Exonuclease; KEGG: lba:Lebu_1206 8.1e-111 exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 8.96.
  
     0.715
KXB67713.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.702
KXB67241.1
Autotransporter beta-domain protein; KEGG: eci:UTI89_C1627 1.9e-92 entS; EntS/YbdA MFS transporter K12516.
 
  
 0.636
KXB63234.1
Polysaccharide biosynthesis protein; KEGG: cco:CCC13826_0528 3.6e-24 cytosol aminopeptidase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.632
KXB59891.1
TIGR02594 family protein; KEGG: edi:EDI_341030 1.7e-14 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
 
     0.631
KXB68663.1
Alpha amylase, catalytic domain protein; KEGG: phm:PSMK_19040 8.4e-92 putative glucosidase; Psort location: Cytoplasmic, score: 9.97; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.599
AphA
HAD phosphatase, family IIIB; KEGG: lba:Lebu_0307 1.2e-125 aphA; acid phosphatase/phosphotransferase; K03788 acid phosphatase (class B).
  
     0.570
KXB69249.1
Hypothetical protein; KEGG: mml:MLC_8780 0.0078 gidB; methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase.
       0.570
KXB64535.1
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
  
     0.554
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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