Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AmySKEGG: lba:Lebu_2051 2.2e-250 alpha-amylase; K01176 alpha-amylase; Psort location: Cytoplasmic, score: 9.97. (480 aa)    
Predicted Functional Partners:
GlgP
Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.916
KXB64094.1
Phosphorylase, glycogen/starch/alpha-glucan family; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.916
MalQ
4-alpha-glucanotransferase; KEGG: lba:Lebu_1529 1.2e-244 4-alpha-glucanotransferase; K00705 4-alpha-glucanotransferase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.914
KXB63233.1
Hypothetical protein; KEGG: bbe:BBR47_37860 2.9e-115 hypothetical protein; K16150 glycogen(starch) synthase; Psort location: Cytoplasmic, score: 8.96; Belongs to the glycosyl hydrolase 57 family.
     
 0.902
MapP
Endonuclease/exonuclease/phosphatase family protein; KEGG: cbj:H04402_01676 5.9e-60 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 8.96.
  
 
  0.901
KXB70238.1
Alpha amylase, catalytic domain protein; KEGG: rmg:Rhom172_0268 9.8e-36 Neopullulanase; Belongs to the glycosyl hydrolase 13 family.
     
  0.900
KXB68663.1
Alpha amylase, catalytic domain protein; KEGG: phm:PSMK_19040 8.4e-92 putative glucosidase; Psort location: Cytoplasmic, score: 9.97; Belongs to the glycosyl hydrolase 13 family.
     
  0.900
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
       0.631
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.560
KXB67924.1
Hypothetical protein; KEGG: lba:Lebu_2238 1.8e-16 PTS system beta-glucoside-specific transporter subunit IIABC; K02755 PTS system, beta-glucosides-specific IIA component; K02756 PTS system, beta-glucosides-specific IIB component K02757.
  
  
 0.551
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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