Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB69229.1Mg chelatase-like protein; KEGG: ccm:Ccan_16640 3.0e-113 competence protein comM K07391; Psort location: Cytoplasmic, score: 9.97. (510 aa)    
Predicted Functional Partners:
KXB69050.1
DNA protecting protein DprA; KEGG: ccm:Ccan_01460 1.3e-41 protein smf K04096; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.811
KXB70237.1
comF family protein; KEGG: pva:Pvag_2959 7.2e-10 yhgH; amidophosphoribosyltransferase; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.785
KXB60207.1
ComEC/Rec2-like protein; KEGG: apb:SAR116_0501 2.5e-14 DNA uptake protein ComEC K02238; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.755
KXB70235.1
TIGR00252 family protein; KEGG: vfi:VF_2212 1.3e-16 yraN; hypothetical protein K07460; Belongs to the UPF0102 family.
 
  
 0.670
KXB69230.1
KEGG: sta:STHERM_c18850 2.9e-28 DNA protection during starvation protein K04047; Psort location: Cytoplasmic, score: 9.97; Belongs to the Dps family.
       0.456
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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