Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB69118.1Hypothetical protein; KEGG: pvx:PVX_123795 0.00029 DNA GyrAse a-subunit; K02469 DNA gyrase subunit A; Psort location: Cytoplasmic, score: 8.96. (285 aa)    
Predicted Functional Partners:
KXB69119.1
Hypothetical protein; KEGG: zin:ZICARI_050 0.00078 rpoB; putative DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta; Psort location: Cytoplasmic, score: 8.96.
       0.714
KXB69120.1
Hypothetical protein; KEGG: ssr:SALIVB_1694 9.4e-05 ribonuclease Z K02003; Psort location: Cytoplasmic, score: 8.96.
       0.714
KXB69117.1
KEGG: lba:Lebu_0148 3.7e-177 adenine-specific DNA-methyltransferase; K07316 adenine-specific DNA-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
       0.651
KXB69116.1
KEGG: vpr:Vpar_0449 2.1e-270 type III restriction protein res subunit; K01156 type III restriction enzyme.
       0.614
KXB69121.1
Hypothetical protein; KEGG: afu:AF0894 0.0022 argS; arginyl-tRNA synthetase K01887.
       0.445
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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