Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB68993.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (295 aa)    
Predicted Functional Partners:
KXB67928.1
Tetratricopeptide repeat protein; KEGG: tet:TTHERM_01109810 5.8e-08 Tubulin-tyrosine ligase family protein; Psort location: Cytoplasmic, score: 8.96.
  
 0.622
KXB68994.1
Hypothetical protein.
  
  
 0.615
KXB68995.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.588
KXB68996.1
Hypothetical protein; KEGG: ure:UREG_00888 2.2e-36 ATP-dependent RNA helicase DHX8; K12813 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16; Psort location: Cytoplasmic, score: 8.96.
       0.588
KXB64075.1
Hypothetical protein.
   
 0.559
LpdA
Dihydrolipoyl dehydrogenase; KEGG: lba:Lebu_0545 2.8e-243 dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
   
 0.556
KXB59745.1
ATPase, AAA family; KEGG: atm:ANT_16460 6.3e-72 putative ATPase; Psort location: CytoplasmicMembrane, score: 7.88.
    
 0.544
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
   0.510
pcp
Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
    
   0.473
KXB66334.1
Putative acyl carrier protein; KEGG: lba:Lebu_0132 0. AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase; Psort location: CytoplasmicMembrane, score: 7.88.
   
 0.473
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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