Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KXB69005.1Initiator RepB protein; KEGG: zin:ZICARI_026 5.4e-07 pheT; putative phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 8.96. (399 aa)    
Predicted Functional Partners:
KXB69003.1
Oxidoreductase, NAD-binding domain protein; KEGG: efc:EFAU004_00935 6.2e-113 oxidoreductase family, NAD-binding Rossmann fold protein; Psort location: Cytoplasmic, score: 8.96.
       0.493
KXB69004.1
Lichenan-specific phosphotransferase enzyme IIA component family protein; KEGG: lba:Lebu_0836 2.4e-47 PTS system lactose/cellobiose-specific transporter subunit IIA; K02759 PTS system, cellobiose-specific IIA component; Psort location: Cytoplasmic, score: 9.97.
       0.493
KXB69006.1
Lichenan-specific phosphotransferase enzyme IIB component; KEGG: lba:Lebu_0834 1.5e-45 PTS system lactose/cellobiose-specific transporter subunit IIB; K02760 PTS system, cellobiose-specific IIB component; Psort location: Cytoplasmic, score: 9.26.
       0.416
KXB70112.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
   
    0.406
KXB67991.1
Putative phage head-tail adaptor; Psort location: Cytoplasmic, score: 8.96.
   
    0.406
KXB63340.1
Phage antirepressor protein; Psort location: Cytoplasmic, score: 8.96.
   
    0.406
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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