Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB69028.1Hypothetical protein; KEGG: fnu:FN0946 4.5e-30 zinc metalloprotease; K01417 K07043; Psort location: Cytoplasmic, score: 8.96. (234 aa)    
Predicted Functional Partners:
KXB69027.1
tRNA nucleotidyltransferase/poly(A) polymerase family protein; KEGG: str:Sterm_2202 1.0e-149 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme); Psort location: Cytoplasmic, score: 9.97.
  
    0.668
KXB59615.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   
 0.525
KXB59617.1
KEGG: fma:FMG_1532 2.0e-297 type I restriction-modification system DNA methylase; K03427 type I restriction enzyme M protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.504
KXB59616.1
KEGG: pmz:HMPREF0659_A7007 1.7e-46 type I restriction modification DNA specificity domain protein; K01154 type I restriction enzyme, S subunit; Psort location: Cytoplasmic, score: 8.96.
 
    0.417
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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