rnmV protein (Leptotrichia wadei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rnmV

Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (194 aa)

Predicted Functional Partners:

KXB68819.1

0.664

KXB69982.1

0.584

KXB64678.1

0.487

KXB68820.1

0.459

deoD

0.459

rsmA

0.434

Your Current Organism:

Leptotrichia wadei

NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXB64678.1	rnmV	HMPREF3180_01317	HMPREF3180_00663	S4 domain protein; Psort location: Cytoplasmic, score: 8.96.	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	0.487
KXB68819.1	KXB68820.1	HMPREF3180_00664	HMPREF3180_00665	Xaa-His dipeptidase; KEGG: lba:Lebu_0991 7.8e-248 aminoacyl-histidine dipeptidase; K01270 dipeptidase D; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.574
KXB68819.1	deoD	HMPREF3180_00664	HMPREF3180_00666	Xaa-His dipeptidase; KEGG: lba:Lebu_0991 7.8e-248 aminoacyl-histidine dipeptidase; K01270 dipeptidase D; Psort location: Cytoplasmic, score: 8.96.	KEGG: lba:Lebu_0989 2.3e-115 purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase; Psort location: Cytoplasmic, score: 9.26.	0.527
KXB68819.1	rnmV	HMPREF3180_00664	HMPREF3180_00663	Xaa-His dipeptidase; KEGG: lba:Lebu_0991 7.8e-248 aminoacyl-histidine dipeptidase; K01270 dipeptidase D; Psort location: Cytoplasmic, score: 8.96.	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	0.664
KXB68820.1	KXB68819.1	HMPREF3180_00665	HMPREF3180_00664	Hypothetical protein.	Xaa-His dipeptidase; KEGG: lba:Lebu_0991 7.8e-248 aminoacyl-histidine dipeptidase; K01270 dipeptidase D; Psort location: Cytoplasmic, score: 8.96.	0.574
KXB68820.1	deoD	HMPREF3180_00665	HMPREF3180_00666	Hypothetical protein.	KEGG: lba:Lebu_0989 2.3e-115 purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase; Psort location: Cytoplasmic, score: 9.26.	0.773
KXB68820.1	rnmV	HMPREF3180_00665	HMPREF3180_00663	Hypothetical protein.	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	0.459
KXB69982.1	deoD	HMPREF3180_00193	HMPREF3180_00666	KEGG: hso:HS_0087 1.9e-70 nadR; nicotinamide-nucleotide adenylyltransferase K06211; Psort location: Cytoplasmic, score: 8.96.	KEGG: lba:Lebu_0989 2.3e-115 purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase; Psort location: Cytoplasmic, score: 9.26.	0.929
KXB69982.1	rnmV	HMPREF3180_00193	HMPREF3180_00663	KEGG: hso:HS_0087 1.9e-70 nadR; nicotinamide-nucleotide adenylyltransferase K06211; Psort location: Cytoplasmic, score: 8.96.	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	0.584
deoD	KXB68819.1	HMPREF3180_00666	HMPREF3180_00664	KEGG: lba:Lebu_0989 2.3e-115 purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase; Psort location: Cytoplasmic, score: 9.26.	Xaa-His dipeptidase; KEGG: lba:Lebu_0991 7.8e-248 aminoacyl-histidine dipeptidase; K01270 dipeptidase D; Psort location: Cytoplasmic, score: 8.96.	0.527
deoD	KXB68820.1	HMPREF3180_00666	HMPREF3180_00665	KEGG: lba:Lebu_0989 2.3e-115 purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase; Psort location: Cytoplasmic, score: 9.26.	Hypothetical protein.	0.773
deoD	KXB69982.1	HMPREF3180_00666	HMPREF3180_00193	KEGG: lba:Lebu_0989 2.3e-115 purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase; Psort location: Cytoplasmic, score: 9.26.	KEGG: hso:HS_0087 1.9e-70 nadR; nicotinamide-nucleotide adenylyltransferase K06211; Psort location: Cytoplasmic, score: 8.96.	0.929
deoD	rnmV	HMPREF3180_00666	HMPREF3180_00663	KEGG: lba:Lebu_0989 2.3e-115 purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase; Psort location: Cytoplasmic, score: 9.26.	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	0.459
rnmV	KXB64678.1	HMPREF3180_00663	HMPREF3180_01317	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	S4 domain protein; Psort location: Cytoplasmic, score: 8.96.	0.487
rnmV	KXB68819.1	HMPREF3180_00663	HMPREF3180_00664	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	Xaa-His dipeptidase; KEGG: lba:Lebu_0991 7.8e-248 aminoacyl-histidine dipeptidase; K01270 dipeptidase D; Psort location: Cytoplasmic, score: 8.96.	0.664
rnmV	KXB68820.1	HMPREF3180_00663	HMPREF3180_00665	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	Hypothetical protein.	0.459
rnmV	KXB69982.1	HMPREF3180_00663	HMPREF3180_00193	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	KEGG: hso:HS_0087 1.9e-70 nadR; nicotinamide-nucleotide adenylyltransferase K06211; Psort location: Cytoplasmic, score: 8.96.	0.584
rnmV	deoD	HMPREF3180_00663	HMPREF3180_00666	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	KEGG: lba:Lebu_0989 2.3e-115 purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase; Psort location: Cytoplasmic, score: 9.26.	0.459
rnmV	rsmA	HMPREF3180_00663	HMPREF3180_02234	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.434
rsmA	rnmV	HMPREF3180_02234	HMPREF3180_00663	Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.	0.434

Server load: medium (42%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Co-occurrence

Experiments

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About