Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB68819.1Xaa-His dipeptidase; KEGG: lba:Lebu_0991 7.8e-248 aminoacyl-histidine dipeptidase; K01270 dipeptidase D; Psort location: Cytoplasmic, score: 8.96. (514 aa)    
Predicted Functional Partners:
AspC
Aminotransferase, class I/II; KEGG: lba:Lebu_1146 1.5e-198 aspartate aminotransferase; K00812 aspartate aminotransferase; Psort location: Cytoplasmic, score: 9.97.
 
 
  0.845
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
   
 
 0.839
KXB59951.1
Putative cystathionine beta-lyase; KEGG: lba:Lebu_1479 1.1e-186 cystathionine gamma-synthase; K01760 cystathionine beta-lyase; Psort location: Cytoplasmic, score: 9.97.
    
  0.812
KXB60746.1
KEGG: lba:Lebu_0124 2.2e-149 cysteine synthase; K01738 cysteine synthase A; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.806
KXB64098.1
Putative cystathionine beta-lyase PatB; KEGG: lba:Lebu_2126 9.0e-199 class I and II aminotransferase; K14155 cystathione beta-lyase; Psort location: Cytoplasmic, score: 8.96.
    
  0.803
KXB61022.1
Hemolysin; KEGG: lba:Lebu_0503 6.1e-161 class I and II aminotransferase; K00842 aminotransferase; Psort location: Cytoplasmic, score: 9.97.
    
  0.803
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
       0.664
KXB68820.1
Hypothetical protein.
       0.574
deoD
KEGG: lba:Lebu_0989 2.3e-115 purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase; Psort location: Cytoplasmic, score: 9.26.
     
 0.527
KXB59511.1
Hypothetical protein; KEGG: smg:SMGWSS_035 0.00019 atpF; ATP synthase F0 subunit b; K02109 F-type H+-transporting ATPase subunit b; Psort location: Cytoplasmic, score: 8.96.
  
     0.513
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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