Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB67423.1Hypothetical protein. (47 aa)    
Predicted Functional Partners:
KXB67422.1
Hypothetical protein; KEGG: cbe:Cbei_1283 0.0034 hemA; glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase.
       0.642
KXB67424.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.569
KXB70237.1
comF family protein; KEGG: pva:Pvag_2959 7.2e-10 yhgH; amidophosphoribosyltransferase; Psort location: Cytoplasmic, score: 8.96.
   
    0.407
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.401
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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