Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB67249.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (408 aa)    
Predicted Functional Partners:
KXB67250.1
CobW/P47K family protein; KEGG: awo:Awo_c33120 1.6e-73 Ni2+-binding GTPase, urease/hydrogenase maturation protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.932
KXB67251.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A1066 3.8e-49 ABC transporter; Psort location: Cytoplasmic, score: 8.96.
 
     0.912
KXB64370.1
HAMP domain protein; KEGG: lba:Lebu_0316 9.0e-286 sensor with HAMP domain; K07718 two-component system, sensor histidine kinase YesM; Psort location: CytoplasmicMembrane, score: 9.82.
   
   0.628
KXB59752.1
Imelysin; Psort location: Periplasmic, score: 9.76.
   
    0.426
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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