Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB66564.1uracil-DNA glycosylase, family 4; KEGG: lba:Lebu_1116 1.6e-75 phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type; Psort location: Cytoplasmic, score: 8.96. (177 aa)    
Predicted Functional Partners:
KXB66565.1
Metallo-beta-lactamase domain protein; KEGG: fnu:FN0900 6.8e-59 metal dependent hydrolase K01567; Psort location: Cytoplasmic, score: 9.97.
       0.741
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.598
KXB66562.1
Hypothetical protein; KEGG: fnu:FN1515 0.00043 phophatidylinositol-4-phosphate 5-kinase.
       0.531
KXB64189.1
Universal bacterial protein YeaZ; KEGG: fnu:FN0928 5.1e-22 O-sialoglycoprotein endopeptidase K01409; Psort location: Cytoplasmic, score: 8.96.
  
    0.521
KXB66566.1
Hypothetical protein.
       0.510
KXB68816.1
Putative D-lactate dehydrogenase; KEGG: lba:Lebu_0987 1.7e-174 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; K03778 D-lactate dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
    0.479
KXB64386.1
KEGG: lba:Lebu_2280 5.3e-210 oxaloacetate decarboxylase; K01571 oxaloacetate decarboxylase, alpha subunit; Psort location: Cytoplasmic, score: 9.97.
   
    0.451
KXB69575.1
Peptidase, M50 family; KEGG: cbs:COXBURSA331_A1937 4.7e-35 peptidase, M50 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.426
KXB68328.1
Peptidase, S41 family; KEGG: lba:Lebu_0341 4.1e-210 carboxyl-terminal protease; K03797 carboxyl-terminal processing protease; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the peptidase S41A family.
  
    0.426
KXB70016.1
KEGG: shn:Shewana3_3590 8.5e-13 single-strand binding protein K03111.
   
 
 0.400
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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