Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB66083.1Transporter, major facilitator family protein; KEGG: eci:UTI89_C4210 1.1e-14 yicJ; transporter K03292; Psort location: CytoplasmicMembrane, score: 10.00. (422 aa)    
Predicted Functional Partners:
KXB64535.1
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
  
     0.728
KXB67231.1
KEGG: lba:Lebu_1817 1.2e-157 DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 8.96.
  
     0.692
KXB59911.1
Hypothetical protein; KEGG: fnu:FN0891 5.6e-48 DNAse I homologous protein DHP2 precursor K01157.
  
    0.667
KXB59417.1
Acetyltransferase, GNAT family; KEGG: str:Sterm_3827 1.7e-23 N-acetyltransferase GCN5; K03789 ribosomal-protein-alanine N-acetyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.602
KXB69238.1
Outer membrane protein transport protein, Ompp1/FadL/TodX family; Psort location: OuterMembrane, score: 9.52.
  
     0.594
KXB66082.1
Hypothetical protein; KEGG: bya:BANAU_2329 8.2e-07 yqkD; Abhydrolase domain-containing protein 13 K06889.
  
  
 0.536
Tkt
Transketolase, thiamine diphosphate binding domain protein; KEGG: lba:Lebu_1902 3.1e-134 transketolase; K00615 transketolase; Psort location: Cytoplasmic, score: 9.26.
       0.535
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
     0.534
KXB61704.1
Hypothetical protein; KEGG: stk:STP_1439 1.6e-08 truA; tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase; Psort location: Cytoplasmic, score: 8.96.
 
     0.529
KXB65504.1
Hypothetical protein; KEGG: edi:EDI_282700 0.0034 structural maintenance of chromosomes protein K06669; Psort location: Cytoplasmic, score: 8.96.
  
     0.488
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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