Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB65443.1Hypothetical protein. (42 aa)    
Predicted Functional Partners:
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.773
KXB65445.1
Transporter, auxin efflux carrier family protein; KEGG: azo:azo2550 5.4e-27 mdcF3; putative malonate transporter K07088; Psort location: CytoplasmicMembrane, score: 10.00.
       0.675
KXB65446.1
Hypothetical protein; KEGG: edi:EDI_341030 1.4e-11 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
       0.604
KXB65442.1
KEGG: lba:Lebu_1408 1.1e-104 HAD-superfamily hydrolase; K01091 phosphoglycolate phosphatase; Psort location: Cytoplasmic, score: 9.97.
       0.449
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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