Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB65472.1Hypothetical protein; KEGG: edi:EDI_341030 0.00022 intracellular protein transport protein USO1. (511 aa)    
Predicted Functional Partners:
KXB67961.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.777
KXB67963.1
Tetratricopeptide repeat protein; KEGG: cfu:CFU_0128 1.0e-19 Ser/Thr phosphatase.
 
  
 0.640
KXB59891.1
TIGR02594 family protein; KEGG: edi:EDI_341030 1.7e-14 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
 
    0.617
KXB61421.1
Amidohydrolase family protein; KEGG: bmq:BMQ_3613 3.6e-60 amidohydrolase.
  
     0.571
KXB67713.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.549
KXB64645.1
Exonuclease; KEGG: lba:Lebu_1206 8.1e-111 exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 8.96.
  
     0.541
KXB66082.1
Hypothetical protein; KEGG: bya:BANAU_2329 8.2e-07 yqkD; Abhydrolase domain-containing protein 13 K06889.
  
     0.490
KXB64518.1
KEGG: gvg:HMPREF0421_21073 3.1e-244 ABC transporter ATP-binding protein; Psort location: Cytoplasmic, score: 9.97.
  
     0.469
KXB62188.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.462
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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