Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB65473.1Ion channel; KEGG: isc:IscW_ISCW006705 7.3e-16 voltage-gated channel, putative K05320; Psort location: CytoplasmicMembrane, score: 10.00. (260 aa)    
Predicted Functional Partners:
Cdr
KEGG: hor:Hore_21000 3.8e-65 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00359 NADH oxidase; Psort location: Cytoplasmic, score: 9.26.
  
    0.755
KXB69208.1
Methyltransferase small domain protein; KEGG: ccl:Clocl_3863 1.3e-39 16S RNA G1207 methylase RsmC; K00564 16S rRNA (guanine1207-N2)-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
 
      0.611
KXB69055.1
KEGG: str:Sterm_0248 8.3e-125 TrkH family potassium uptake protein K03498; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.605
TrkH
Cation transport protein; KEGG: ssr:SALIVB_0283 4.2e-114 DNA polymerase IV K03498; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.605
udk
Uridine kinase; KEGG: lba:Lebu_1122 1.9e-102 uridine kinase; K00876 uridine kinase; Psort location: Cytoplasmic, score: 9.97.
  
    0.585
KXB60883.1
KEGG: lba:Lebu_0028 7.0e-247 uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase; Psort location: Cytoplasmic, score: 9.97.
  
    0.462
KXB64520.1
KEGG: lba:Lebu_0381 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.452
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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