Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB65496.1OmpA family protein; KEGG: sli:Slin_0746 2.1e-10 V-type H(+)-translocating pyrophosphatase K15987. (255 aa)    
Predicted Functional Partners:
KXB64654.1
Hypothetical protein.
  
     0.512
KXB65495.1
Putative histidine ABC transporter, periplasmic histidine-binding protein HisJ; KEGG: cco:CCC13826_0411 6.3e-56 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02030; Psort location: Periplasmic, score: 9.99; Belongs to the bacterial solute-binding protein 3 family.
   
   0.459
KXB64520.1
KEGG: lba:Lebu_0381 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
  
   0.447
KXB69195.1
OmpA family protein; KEGG: pfe:PSF113_0716 5.6e-09 yfiB; protein YfiB.
  
 
0.427
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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