Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB64632.1Hypothetical protein; KEGG: bqy:MUS_2079 0.00027 transcriptional regulator; Psort location: Cytoplasmic, score: 8.96. (310 aa)    
Predicted Functional Partners:
KXB64633.1
Hypothetical protein; KEGG: pmx:PERMA_1311 6.0e-06 hsdM; type I restriction enzyme M protein (HsdM) K03427; Psort location: Cytoplasmic, score: 8.96.
       0.773
KXB64634.1
Phosphocarrier, HPr family; KEGG: sax:USA300HOU_1025 1.0e-09 ptsH; phosphocarrier protein HPr K11189; Psort location: Cytoplasmic, score: 9.97.
       0.648
KXB64638.1
Hypothetical protein; KEGG: ave:Arcve_1463 4.1e-05 CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA; Psort location: Cytoplasmic, score: 8.96.
 
     0.627
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.615
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.579
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.579
KXB69916.1
KEGG: str:Sterm_2945 5.8e-14 hypothetical protein; K03060 DNA-directed RNA polymerase subunit omega.
    
   0.524
KXB64636.1
Hypothetical protein; KEGG: edi:EDI_048910 5.4e-20 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
 
     0.508
KXB64635.1
Hypothetical protein; KEGG: lbc:LACBIDRAFT_245630 3.6e-07 hypothetical protein; K06030 mitofusin; Psort location: Cytoplasmic, score: 8.96.
 
     0.471
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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