Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB64678.1S4 domain protein; Psort location: Cytoplasmic, score: 8.96. (288 aa)    
Predicted Functional Partners:
KXB65937.1
KEGG: edi:EDI_341030 7.7e-06 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
  
 
   0.833
rpmG
Ribosomal protein L33; KEGG: mmo:MMOB5490 1.1e-05 rpmG; 50S ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL33 family.
    
  0.787
rplQ
Ribosomal protein L17; KEGG: apb:SAR116_2416 1.7e-23 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.97.
    
  0.787
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
  0.787
rpmA
Ribosomal protein L27; KEGG: apb:SAR116_1855 3.3e-20 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL27 family.
    
  0.787
rpmF
Ribosomal protein L32; KEGG: apb:SAR116_0011 3.0e-10 50S ribosomal protein L32 K02911; Belongs to the bacterial ribosomal protein bL32 family.
    
  0.787
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
    
  0.787
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
  0.787
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
  
  0.770
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
  0.745
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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