Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB64686.1ABC transporter, substrate-binding protein; KEGG: saj:SaurJH9_2430 1.0e-32 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 7.88. (327 aa)    
Predicted Functional Partners:
KXB64687.1
ABC transporter, ATP-binding protein; KEGG: lba:Lebu_1062 2.2e-117 ABC transporter; K09817 zinc transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 7.88.
 
 
 0.990
MntB_1
KEGG: apb:SAR116_2225 3.2e-22 zinc ABC transporter membrane spanning protein K09816; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.987
KXB66222.1
ABC 3 transport family protein; KEGG: apb:SAR116_2225 9.0e-25 zinc ABC transporter membrane spanning protein K09816; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.861
KXB66223.1
Putative manganese transport system ATP-binding protein MntA; KEGG: lan:Lacal_1142 1.3e-80 phosphonate-transporting ATPase K11710; Psort location: CytoplasmicMembrane, score: 7.88.
 
  
 0.840
KXB66221.1
ABC 3 transport family protein; KEGG: pfe:PSF113_0030 2.3e-16 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.831
KXB64685.1
Transcriptional regulator, Fur family; KEGG: mct:MCR_0333 1.7e-05 fur; ferric uptake regulation protein Fur K03711; Belongs to the Fur family.
  
  
 0.809
KXB59625.1
CobW/P47K family protein; KEGG: ftu:FTT_1000c 7.6e-11 cobS; cobalamin (vitamin B12) synthesis protein/P47K family protein; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.539
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.483
KXB64684.1
GroES-like protein; KEGG: ssa:SSA_1279 2.2e-62 oxidoreductase; Psort location: Cytoplasmic, score: 9.97.
       0.479
rpmB
Ribosomal protein L28; KEGG: apb:SAR116_1905 1.9e-06 50S ribosomal protein L28 K02902; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.459
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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