Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB64699.1Hypothetical protein; Belongs to the UPF0246 family. (243 aa)    
Predicted Functional Partners:
KXB64698.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.773
NrdF
Ribonucleoside-diphosphate reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
       0.773
YafQ
Addiction module toxin, RelE/StbE family; Psort location: Cytoplasmic, score: 8.96.
       0.563
KXB64702.1
Addiction module antitoxin, RelB/DinJ family.
       0.563
KXB64697.1
Transcriptional regulator, DeoR family; KEGG: hip:CGSHiEE_02055 1.2e-20 fucI; L-fucose isomerase K02430; Psort location: Cytoplasmic, score: 9.97.
       0.466
KXB64703.1
Death-on-curing family protein; KEGG: yey:Y11_23931 3.9e-05 type I restriction-modification system,specificity subunit S; Psort location: Cytoplasmic, score: 8.96.
       0.423
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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