Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB64566.1Acetyltransferase, GNAT family; KEGG: ppy:PPE_04626 7.3e-23 acetyltransferase; Psort location: Cytoplasmic, score: 9.97. (198 aa)    
Predicted Functional Partners:
KXB64567.1
KEGG: str:Sterm_2426 5.5e-89 prephenate dehydrogenase; K04517 prephenate dehydrogenase.
  
    0.701
KXB64565.1
Hypothetical protein; KEGG: mss:MSU_0820 0.0012 type I site-specific deoxyribonuclease, HsdR family protein; Psort location: Cytoplasmic, score: 8.96.
       0.693
AroF
3-deoxy-7-phosphoheptulonate synthase; KEGG: lba:Lebu_1998 4.7e-170 phospho-2-dehydro-3-deoxyheptonate aldolase; K03856 3-deoxy-7-phosphoheptulonate synthase; Psort location: Cytoplasmic, score: 9.97.
       0.547
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.482
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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