Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB64358.1PSP1 protein; KEGG: gka:GK0026 3.5e-23 signal peptidase II; Psort location: Cytoplasmic, score: 8.96. (168 aa)    
Predicted Functional Partners:
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.830
RadC
KEGG: apb:SAR116_0666 8.5e-29 DNA repair protein RadC K03630; Psort location: Cytoplasmic, score: 9.97; Belongs to the UPF0758 family.
       0.806
KXB64359.1
Hypothetical protein; KEGG: tet:TTHERM_00624140 0.0033 Dual specificity phosphatase, catalytic domain containing protein K01090; Psort location: Cytoplasmic, score: 8.96.
  
    0.458
KXB64356.1
Putative phage head-tail adaptor; KEGG: ccv:CCV52592_1603 1.5e-70 proC; pyrroline-5-carboxylate reductase.
       0.454
KXB69563.1
Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
 
     0.405
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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