STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB64380.1Protein RfaE, domain II; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. (170 aa)    
Predicted Functional Partners:
KXB67894.1
D,D-heptose 1,7-bisphosphate phosphatase; KEGG: lba:Lebu_2282 1.1e-83 histidinol-phosphate phosphatase; K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase; Psort location: Cytoplasmic, score: 9.97.
  
 0.993
KXB69682.1
Protein RfaE, domain I; KEGG: fnu:FN1786 3.8e-81 ADP-heptose synthase; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.977
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily.
   
 0.972
RfaQ
Heptosyltransferase; KEGG: chu:CHU_0080 1.4e-28 rfaQ; glycosyl transferase family protein; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.779
KXB59491.1
Heptosyltransferase; KEGG: lba:Lebu_2259 2.2e-156 glycosyl transferase family protein; K02843 heptosyltransferase II; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.777
KXB64384.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: lba:Lebu_0129 1.1e-65 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Psort location: Cytoplasmic, score: 9.97.
 
 
    0.740
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
 
      0.683
KXB59486.1
Heptosyltransferase; KEGG: hor:Hore_18880 1.5e-24 lipopolysaccharide heptosyltransferase III; K02849 heptosyltransferase III.
 
   
 0.654
KXB64379.1
Hypothetical protein; KEGG: dai:Desaci_1465 9.8e-83 serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial; Psort location: Cytoplasmic, score: 9.97.
  
    0.467
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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