Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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experimentally determined
co-expression
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gene co-occurrence
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[Homology]
Score
RuvBKEGG: lba:Lebu_0331 1.2e-17 ruvB; Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB. (44 aa)    
Predicted Functional Partners:
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
  
 
 0.937
KXB64194.1
Hypothetical protein; KEGG: apr:Apre_1109 0.00019 formyl transferase domain-containing protein; K11175 phosphoribosylglycinamide formyltransferase 1; Psort location: Cytoplasmic, score: 8.96.
       0.611
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
 
 0.583
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
  
  
 0.477
KXB64193.1
Flavodoxin; KEGG: tpl:TPCCA_0925 8.9e-18 nitrogenase (flavodoxin).
       0.467
KXB64858.1
KEGG: apb:SAR116_0664 5.8e-14 molybdopterin binding domain-containing protein; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.435
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.414
PepO
Peptidase family M13; KEGG: lba:Lebu_1167 0. endothelin-converting enzyme 1; K07386 putative endopeptidase.
   
    0.407
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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