STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB64098.1Putative cystathionine beta-lyase PatB; KEGG: lba:Lebu_2126 9.0e-199 class I and II aminotransferase; K14155 cystathione beta-lyase; Psort location: Cytoplasmic, score: 8.96. (400 aa)    
Predicted Functional Partners:
KXB59951.1
Putative cystathionine beta-lyase; KEGG: lba:Lebu_1479 1.1e-186 cystathionine gamma-synthase; K01760 cystathionine beta-lyase; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.941
KXB61022.1
Hemolysin; KEGG: lba:Lebu_0503 6.1e-161 class I and II aminotransferase; K00842 aminotransferase; Psort location: Cytoplasmic, score: 9.97.
  
  
 
0.915
KXB60746.1
KEGG: lba:Lebu_0124 2.2e-149 cysteine synthase; K01738 cysteine synthase A; Psort location: Cytoplasmic, score: 9.97.
    
 0.914
MetH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.911
AspC
Aminotransferase, class I/II; KEGG: lba:Lebu_1146 1.5e-198 aspartate aminotransferase; K00812 aspartate aminotransferase; Psort location: Cytoplasmic, score: 9.97.
  
  
0.910
luxS
S-ribosylhomocysteinase LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
     
  0.900
KXB69098.1
Methionine synthase, vitamin-B12 independent; KEGG: scp:HMPREF0833_10873 2.2e-124 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Psort location: Cytoplasmic, score: 8.96.
     
  0.900
metE
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
     
  0.900
IlvA1
KEGG: lba:Lebu_1758 2.6e-176 threonine dehydratase; K01754 threonine dehydratase; Psort location: Cytoplasmic, score: 9.97.
    
  0.804
KXB68813.1
KEGG: lba:Lebu_0845 1.3e-192 homoserine dehydrogenase; K00003 homoserine dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
     
 0.803
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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