Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
KXB64102.1DHHA1 domain protein; KEGG: zga:zobellia_3700 1.3e-32 phosphoesterase K06881; Psort location: Cytoplasmic, score: 8.96. (338 aa)    
Predicted Functional Partners:
KXB64524.1
Putative phage head-tail adaptor; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
 
  0.905
KXB64525.1
KEGG: lba:Lebu_0376 1.0e-158 sulfate adenylyltransferase subunit 2; K00957 sulfate adenylyltransferase subunit 2; Psort location: Cytoplasmic, score: 9.97.
   
 
  0.901
KXB64526.1
4Fe-4S binding domain protein; KEGG: dma:DMR_05390 3.8e-10 aprB; adenylylsulfate reductase subunit alpha; K00395 adenylylsulfate reductase, subunit B.
     
  0.900
KXB64527.1
KEGG: lba:Lebu_0374 0. adenylylsulfate reductase subunit alpha; K00394 adenylylsulfate reductase, subunit A; Psort location: CytoplasmicMembrane, score: 7.88.
     
  0.900
KXB64103.1
Sporulation and cell division repeat protein; KEGG: ctu:CTU_13460 2.0e-13 tolA; cell envelope integrity inner membrane protein TolA K03646; Psort location: OuterMembrane, score: 9.92.
   
   0.662
KXB64100.1
Hypothetical protein.
       0.648
KXB64101.1
Hypothetical protein.
       0.648
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
    0.637
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
   
 0.607
LepA_2
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.
 
    0.537
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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