Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB63332.1Hypothetical protein. (45 aa)    
Predicted Functional Partners:
KXB63330.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.727
KXB63331.1
Hypothetical protein.
       0.727
KXB63329.1
Hypothetical protein.
       0.587
KXB63333.1
Hypothetical protein; KEGG: mpu:MYPU_1880 4.4e-05 mucB; DNA-damage repair protein MucB; K02346 DNA polymerase IV; Psort location: Cytoplasmic, score: 8.96.
       0.449
KXB63334.1
Hypothetical protein.
       0.449
KXB63327.1
Phage terminase, large subunit, PBSX family; Psort location: Cytoplasmic, score: 8.96.
       0.408
KXB63328.1
Hypothetical protein; KEGG: ddi:DDB_G0274493 2.2e-08 lig1; DNA ligase I; K10747 DNA ligase 1; Psort location: Cytoplasmic, score: 8.96.
       0.408
KXB63325.1
Phage head morphogeneis protein, SPP1 gp7 family; Psort location: Cytoplasmic, score: 8.96.
       0.401
KXB63326.1
Hypothetical protein; KEGG: tva:TVAG_387410 1.5e-05 viral A-type inclusion protein; K02331 DNA polymerase phi subunit; Psort location: Cytoplasmic, score: 8.96.
       0.401
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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