Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB63340.1Phage antirepressor protein; Psort location: Cytoplasmic, score: 8.96. (265 aa)    
Predicted Functional Partners:
KXB63339.1
Hypothetical protein.
       0.773
KXB63341.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.757
KXB63335.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.603
KXB63336.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.603
KXB63337.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.603
KXB63338.1
Hypothetical protein.
       0.603
KXB63342.1
Hypothetical protein.
       0.498
KXB63333.1
Hypothetical protein; KEGG: mpu:MYPU_1880 4.4e-05 mucB; DNA-damage repair protein MucB; K02346 DNA polymerase IV; Psort location: Cytoplasmic, score: 8.96.
       0.418
KXB63334.1
Hypothetical protein.
       0.418
KXB63311.1
Phage tail tape measure protein, TP901 family; KEGG: bya:BANAU_2613 5.8e-19 phage tail like protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.415
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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