Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB62171.1PspC domain protein. (73 aa)    
Predicted Functional Partners:
KXB69191.1
PspA/IM30 family protein; KEGG: phu:Phum_PHUM098460 6.7e-07 myosin-9, putative K10352; Psort location: CytoplasmicMembrane, score: 7.88.
  
 
 0.937
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
       0.574
rpsB
Ribosomal protein S2; KEGG: apb:SAR116_0519 1.1e-56 30S ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family.
       0.520
KXB68825.1
Protease DegQ family protein; KEGG: str:Sterm_3616 2.2e-101 protease Do; Psort location: Periplasmic, score: 9.76.
   
  
 0.418
KXB60884.1
Peptidase Do; KEGG: str:Sterm_3616 2.7e-112 protease Do.
   
  
 0.418
KXB59932.1
Trypsin; KEGG: sng:SNE_A06530 3.0e-81 deGP10; protease Do-like 10; Psort location: Periplasmic, score: 9.76.
   
  
 0.418
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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