Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB61704.1Hypothetical protein; KEGG: stk:STP_1439 1.6e-08 truA; tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase; Psort location: Cytoplasmic, score: 8.96. (342 aa)    
Predicted Functional Partners:
KXB67231.1
KEGG: lba:Lebu_1817 1.2e-157 DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 8.96.
 
    0.774
KXB64535.1
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
  
    0.755
KXB65504.1
Hypothetical protein; KEGG: edi:EDI_282700 0.0034 structural maintenance of chromosomes protein K06669; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.743
KXB69238.1
Outer membrane protein transport protein, Ompp1/FadL/TodX family; Psort location: OuterMembrane, score: 9.52.
  
     0.676
KXB59911.1
Hypothetical protein; KEGG: fnu:FN0891 5.6e-48 DNAse I homologous protein DHP2 precursor K01157.
  
    0.667
KXB59417.1
Acetyltransferase, GNAT family; KEGG: str:Sterm_3827 1.7e-23 N-acetyltransferase GCN5; K03789 ribosomal-protein-alanine N-acetyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
     0.640
KXB61021.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.636
KXB61020.1
Hypothetical protein; KEGG: mru:mru_1319 0.00010 DEAD/DEAH box helicase domain-containing protein; K03725 archaea-specific helicase.
 
     0.634
KXB66228.1
KEGG: lba:Lebu_2231 4.1e-100 N-glycosylase/DNA lyase; K03653 N-glycosylase/DNA lyase; Psort location: Cytoplasmic, score: 8.96.
  
     0.620
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
 
 0.617
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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