STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IcdPutative isocitrate dehydrogenase, NAD-dependent; KEGG: lba:Lebu_1446 9.5e-156 isocitrate dehydrogenase (NAD(+)); K00030 isocitrate dehydrogenase (NAD+); Psort location: Cytoplasmic, score: 9.97. (337 aa)    
Predicted Functional Partners:
GltA
KEGG: lba:Lebu_1445 1.2e-212 citrate synthase; K01647 citrate synthase; Psort location: Cytoplasmic, score: 9.97.
 
 0.944
LeuC_2
KEGG: lba:Lebu_1447 0. aconitate hydratase; K01681 aconitate hydratase 1; Psort location: Cytoplasmic, score: 9.97.
 
 0.925
KXB69661.1
Putative glutamate synthase [NADPH], large subunit; KEGG: str:Sterm_2340 0. glutamate synthase K00265; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.893
argH
KEGG: lba:Lebu_1184 1.7e-229 argininosuccinate lyase; K01755 argininosuccinate lyase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.829
AspC
Aminotransferase, class I/II; KEGG: lba:Lebu_1146 1.5e-198 aspartate aminotransferase; K00812 aspartate aminotransferase; Psort location: Cytoplasmic, score: 9.97.
   
 0.827
KXB66336.1
Glutamate dehydrogenase, NAD-specific; KEGG: lba:Lebu_2184 4.5e-213 Glu/Leu/Phe/Val dehydrogenase; K00260 glutamate dehydrogenase; Psort location: Cytoplasmic, score: 9.26; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.825
KXB69660.1
KEGG: str:Sterm_2339 1.7e-179 glutamate synthase NADH/NADPH small subunit; K00266 glutamate synthase (NADPH/NADH) small chain; Psort location: Cytoplasmic, score: 9.97.
    
 0.808
PurB
Adenylosuccinate lyase; KEGG: lba:Lebu_1659 1.8e-248 adenylosuccinate lyase; K01756 adenylosuccinate lyase; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.805
leuC
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
 
 
 0.769
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
 
  
 0.740
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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