Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KXB61571.1PAP2 family protein; KEGG: bme:BMEII1103 3.0e-12 phosphatidylglycerophosphatase B K01096; Psort location: CytoplasmicMembrane, score: 10.00. (228 aa)    
Predicted Functional Partners:
KXB68791.1
ATP synthase, subunit C; KEGG: lba:Lebu_0756 2.1e-160 H(+)-transporting two-sector ATPase; K02119 V-type H+-transporting ATPase subunit C; Psort location: Cytoplasmic, score: 8.96.
    
 
 0.625
KXB68788.1
KEGG: lba:Lebu_0753 0. sodium-transporting two-sector ATPase; K02123 V-type H+-transporting ATPase subunit I; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase 116 kDa subunit family.
    
   0.560
msrA-2
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.526
KXB59734.1
AMP-binding enzyme; KEGG: pbs:Plabr_4645 1.7e-37 long-chain-fatty-acid--CoA ligase; Psort location: Cytoplasmic, score: 8.96.
    
 0.515
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.502
atpF
ATP synthase, subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.500
KXB61570.1
Hypothetical protein; KEGG: edi:EDI_282700 1.9e-05 structural maintenance of chromosomes protein K06669.
       0.479
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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