Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB61422.1Endonuclease/exonuclease/phosphatase family protein; KEGG: fco:FCOL_13360 1.4e-08 exodeoxyribonuclease; K01142 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 8.96. (241 aa)    
Predicted Functional Partners:
KXB69678.1
KEGG: pfe:PSF113_0041 2.7e-16 Endonuclease/exonuclease/phosphatase family protein K06896; Psort location: Cytoplasmic, score: 9.97.
  
     0.686
KXB61423.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.610
KXB61424.1
KEGG: lba:Lebu_0733 8.3e-70 DNA-3-methyladenine glycosylase; K03652 DNA-3-methyladenine glycosylase; Psort location: Cytoplasmic, score: 8.96; Belongs to the DNA glycosylase MPG family.
       0.506
KXB67938.1
Cysteine desulfurase, SufS subfamily; KEGG: lba:Lebu_0495 4.7e-202 cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.417
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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