Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ApeBKEGG: smf:Smon_0384 9.6e-179 aspartyl aminopeptidase K01267; Psort location: Cytoplasmic, score: 9.97. (450 aa)    
Predicted Functional Partners:
SrpC
KEGG: apb:SAR116_1094 2.0e-13 chromate transporter K07240; Psort location: CytoplasmicMembrane, score: 10.00.
       0.488
ChrA1
KEGG: apb:SAR116_1094 1.2e-14 chromate transporter K07240; Psort location: CytoplasmicMembrane, score: 10.00.
       0.488
msrA-2
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
   0.450
EsiB
Sel1 repeat protein; KEGG: mct:MCR_0405 3.9e-24 hypothetical protein K07126; Psort location: Extracellular, score: 9.71.
 
     0.433
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.432
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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