Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
SpeAPutative arginine 2-monooxygenase; KEGG: aoe:Clos_0383 1.7e-195 Orn/Lys/Arg decarboxylase major region; K01582 lysine decarboxylase; Psort location: Cytoplasmic, score: 9.97. (512 aa)    
Predicted Functional Partners:
SpeB
Agmatinase; KEGG: lba:Lebu_1823 6.4e-150 agmatinase; K01480 agmatinase; Psort location: Cytoplasmic, score: 8.96; Belongs to the arginase family.
 
 
 0.981
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
 
 0.968
KXB61382.1
KEGG: lba:Lebu_0786 1.2e-217 saccharopine dehydrogenase; K00290 saccharopine dehydrogenase (NAD+, L-lysine forming); Psort location: Cytoplasmic, score: 8.96.
 
  
  0.927
argH
KEGG: lba:Lebu_1184 1.7e-229 argininosuccinate lyase; K01755 argininosuccinate lyase; Psort location: Cytoplasmic, score: 9.97.
     
 0.821
KXB61003.1
Hypothetical protein.
       0.773
KXB61005.1
Putative Peptidoglycan domain protein; KEGG: shb:SU5_0653 4.1e-13 Glycosyl hydrolase lysozyme (N-acetylmuramidase); Psort location: Cytoplasmic, score: 8.96.
       0.559
KXB60438.1
ATPase family protein; KEGG: kcr:Kcr_1472 7.0e-16 ATPase; K03924 MoxR-like ATPase; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.531
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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