Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SpeBAgmatinase; KEGG: lba:Lebu_1823 6.4e-150 agmatinase; K01480 agmatinase; Psort location: Cytoplasmic, score: 8.96; Belongs to the arginase family. (283 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
 
 
 0.989
SpeA
Putative arginine 2-monooxygenase; KEGG: aoe:Clos_0383 1.7e-195 Orn/Lys/Arg decarboxylase major region; K01582 lysine decarboxylase; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.981
KXB61382.1
KEGG: lba:Lebu_0786 1.2e-217 saccharopine dehydrogenase; K00290 saccharopine dehydrogenase (NAD+, L-lysine forming); Psort location: Cytoplasmic, score: 8.96.
   
 0.962
lon
Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
     
  0.753
GltA
KEGG: lba:Lebu_1445 1.2e-212 citrate synthase; K01647 citrate synthase; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.702
leuS
leucine--tRNA ligase; KEGG: lba:Lebu_0511 0. leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.694
KXB67973.1
KEGG: lba:Lebu_0542 1.6e-162 transketolase; K00162 pyruvate dehydrogenase E1 component subunit beta; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.692
LeuC_2
KEGG: lba:Lebu_1447 0. aconitate hydratase; K01681 aconitate hydratase 1; Psort location: Cytoplasmic, score: 9.97.
     
 0.631
atpA-2
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 
  0.612
LpdA
Dihydrolipoyl dehydrogenase; KEGG: lba:Lebu_0545 2.8e-243 dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.568
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.