Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RsmDRNA methyltransferase, RsmD family; KEGG: fnu:FN1329 2.8e-53 methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96. (184 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.721
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
  
 0.689
KXB61011.1
Putative geranyltranstransferase; KEGG: lba:Lebu_0467 4.5e-142 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97.
 
    0.664
KXB59499.1
Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.563
DnaE
KEGG: lba:Lebu_0463 0. DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.
       0.556
KXB61014.1
Hypothetical protein; KEGG: fnu:FN0522 0.0026 exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 8.96.
       0.544
KXB61010.1
Hypothetical protein.
       0.483
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
    0.454
KXB69838.1
7TM receptor with intracellular HD hydrolase; KEGG: bmq:BMQ_4552 6.0e-83 metal-dependent phosphohydrolase K07037; Psort location: CytoplasmicMembrane, score: 9.16.
  
     0.433
KXB61016.1
Cof-like hydrolase; KEGG: ppo:PPM_1251 7.7e-35 yxeH; HMP-PP phosphatase K07024; Psort location: Cytoplasmic, score: 8.96.
       0.430
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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