Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KXB61016.1Cof-like hydrolase; KEGG: ppo:PPM_1251 7.7e-35 yxeH; HMP-PP phosphatase K07024; Psort location: Cytoplasmic, score: 8.96. (263 aa)    
Predicted Functional Partners:
DnaE
KEGG: lba:Lebu_0463 0. DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.
       0.685
KXB61014.1
Hypothetical protein; KEGG: fnu:FN0522 0.0026 exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 8.96.
       0.604
KXB61017.1
Putative cysteine desulfurase; KEGG: lba:Lebu_0459 6.4e-182 class V aminotransferase; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
       0.553
RsmD
RNA methyltransferase, RsmD family; KEGG: fnu:FN1329 2.8e-53 methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96.
       0.430
KXB61019.1
Hypothetical protein; KEGG: cex:CSE_11630 0.0079 atpI; V-type ATP synthase subunit I K02123; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.406
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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