Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
KXB61023.1KEGG: cch:Cag_1938 2.9e-12 Sel1 repeat-containing protein K07126; Psort location: Cytoplasmic, score: 8.96. (532 aa)    
Predicted Functional Partners:
KXB61022.1
Hemolysin; KEGG: lba:Lebu_0503 6.1e-161 class I and II aminotransferase; K00842 aminotransferase; Psort location: Cytoplasmic, score: 9.97.
 
     0.747
KXB67928.1
Tetratricopeptide repeat protein; KEGG: tet:TTHERM_01109810 5.8e-08 Tubulin-tyrosine ligase family protein; Psort location: Cytoplasmic, score: 8.96.
  
 
   0.733
EsiB
Sel1 repeat protein; KEGG: mct:MCR_0405 3.9e-24 hypothetical protein K07126; Psort location: Extracellular, score: 9.71.
  
     0.733
KXB69449.1
KEGG: llo:LLO_1443 1.9e-06 Sel1 repeat protein K07126; Psort location: Cytoplasmic, score: 8.96.
  
     0.705
KXB59914.1
Sel1 repeat protein; KEGG: mct:MCR_0405 3.7e-07 hypothetical protein K07126.
  
     0.705
KXB59631.1
Sel1 repeat protein; KEGG: cha:CHAB381_0736 3.4e-06 beta-lactamase HcpA K07126; Psort location: Cytoplasmic, score: 8.96.
  
     0.685
KXB61024.1
Pyridoxamine 5'-phosphate oxidase family protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.683
KXB61025.1
Hypothetical protein.
       0.642
fhs
KEGG: lba:Lebu_0499 5.2e-290 formate--tetrahydrofolate ligase; K01938 formate--tetrahydrofolate ligase; Psort location: Cytoplasmic, score: 8.96.
       0.609
KXB68609.1
KEGG: cch:Cag_1938 3.4e-10 Sel1 repeat-containing protein K07126; Psort location: Cytoplasmic, score: 8.96.
  
     0.494
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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