Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
KXB60925.1Permease, YjgP/YjgQ family; KEGG: ftg:FTU_1345 3.7e-08 Permease YjgP K07091; Psort location: CytoplasmicMembrane, score: 10.00. (339 aa)    
Predicted Functional Partners:
KXB60915.1
KEGG: lba:Lebu_1857 2.4e-118 ABC transporter; K06861 lipopolysaccharide export system ATP-binding protein; Psort location: Cytoplasmic, score: 9.12.
 
 
 0.991
KXB60926.1
Permease, YjgP/YjgQ family; KEGG: hip:CGSHiEE_03515 7.2e-08 leucyl aminopeptidase K11720; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 
0.966
KXB69287.1
Outer membrane protein, OMP85 family; KEGG: cre:CHLREDRAFT_195498 1.6e-20 OEP80; chloroplast outer envelope protein K07277; Psort location: OuterMembrane, score: 10.00.
 
     0.762
KXB70340.1
Transporter, MotA/TolQ/ExbB proton channel family protein; KEGG: pfe:PSF113_4167 1.1e-17 exbB; protein ExbB/TolQ K03561; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.699
KXB69257.1
OstA-like protein; KEGG: pfa:PF14_0392 0.00013 serine/threonine protein kinase, putative; K08282 non-specific serine/threonine protein kinase; Psort location: OuterMembrane, score: 9.49.
 
  
 0.698
LpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.689
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
     0.632
KXB64364.1
Outer membrane efflux protein; KEGG: ccv:CCV52592_0160 0.0038 fadD; long-chain-fatty-acid--CoA ligase K12543; Psort location: OuterMembrane, score: 10.00.
  
     0.611
KXB60923.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.599
KXB60927.1
Peptidase M16 inactive domain protein; KEGG: fnu:FN1029 1.2e-75 zinc protease K01422; Belongs to the peptidase M16 family.
  
    0.590
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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