Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB60935.1Hypothetical protein. (271 aa)    
Predicted Functional Partners:
KXB60936.1
Hypothetical protein.
      0.779
KXB60937.1
Hypothetical protein; KEGG: eci:UTI89_C1627 6.6e-14 entS; EntS/YbdA MFS transporter K12516; Psort location: OuterMembrane, score: 8.86.
      0.604
CmoA
Methyltransferase domain protein; KEGG: bmq:BMQ_4579 1.0e-23 methyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
    0.466
KXB60938.1
Hypothetical protein; KEGG: cfu:CFU_1278 3.4e-13 yapH; outer membrane autotransporter barrel.
      0.417
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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