Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB60722.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (197 aa)    
Predicted Functional Partners:
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.520
KXB60721.1
Hypothetical protein; KEGG: edi:EDI_119690 0.00010 DNA repair protein RAD50 K10866.
       0.505
KXB61430.1
Putative pectate lyase; KEGG: bsu:BSU07560 8.9e-105 pel; pectate lyase K01728; Psort location: Extracellular, score: 9.72.
  
     0.433
KXB60723.1
Hydrolase, NUDIX family; KEGG: lba:Lebu_0412 2.0e-116 NUDIX hydrolase; K03574 7,8-dihydro-8-oxoguanine triphosphatase; Psort location: Cytoplasmic, score: 8.96.
       0.432
KXB60720.1
KEGG: lba:Lebu_0108 2.6e-121 precorrin-4 C(11)-methyltransferase; K05936 precorrin-4 C11-methyltransferase; Psort location: Cytoplasmic, score: 9.97.
       0.419
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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