Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB60740.1Hypothetical protein; KEGG: mvn:Mevan_0080 0.00074 restriction modification system DNA specificity subunit; K01154 type I restriction enzyme, S subunit; Psort location: Cytoplasmic, score: 8.96. (126 aa)    
Predicted Functional Partners:
KXB60739.1
Hypothetical protein; KEGG: mpe:MYPE6470 1.9e-08 DNA topoisomerase IV subunit A; K02621 topoisomerase IV subunit A; Psort location: Cytoplasmic, score: 8.96.
       0.681
lysS
lysine--tRNA ligase; KEGG: lba:Lebu_0134 8.4e-251 lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.663
KXB60738.1
Putative SPOUT methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.499
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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